PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000827249
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 445aa    MW: 48692.6 Da    PI: 9.5987
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000827249genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.7e-05208230223
                    EETTTTEEESSHHHHHHHHHH.T CS
        zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                    +Cp Cg+ F   +nL+ H+ + H
  MDP0000827249 208 PCPECGEIFMKAENLELHQAVrH 230
                    7******************9888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.037207235IPR007087Zinc finger, C2H2
PROSITE patternPS000280207230IPR007087Zinc finger, C2H2
SuperFamilySSF563993.36E-21232442No hitNo description
Gene3DG3DSA:3.90.228.101.9E-13233441IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MASSNKPKTQ RKPTKQTHHK LQKQHENKNL KPQKAEKKPA EKPPYWSVVR GLLTCKHLQP  60
VQLPQKQKQP NEQQAMEEAD NAAKKCKKMR CSGSLCXNTK IMQRPEMLAS PEVHKKRAST  120
SMGSSGHSNE TSSRSMKAPL HEINGVVSAS SSSFSAVSSS NNSSSAAGGG SFRAMPFRRF  180
SGCYECRMVV DPVLGFARDP SLRGSICPCP ECGEIFMKAE NLELHQAVRH AVSELGPEDT  240
SKNIVEIIFQ SSWLKKETPI CKIDRILKVH NTQNTITKFE EYRDSIKAKA TKLPKKHPRC  300
IADGNELLRF HCTTFACSLG LNGSSNLCNS IPHCNVCSII KNGFNKFSGE LTELGILTTA  360
TSGRAHDKAV VAAEEGDKRA MLVCRVIAGR VKKNVEGSVG NGNVGMEEYD SVAGAVGVYS  420
NLDELYVFNP KAILPCFVVI YGGY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008361552.10.0PREDICTED: uncharacterized protein LOC103425243
TrEMBLM5XJ180.0M5XJ18_PRUPE; Uncharacterized protein
STRINGVIT_18s0001g03670.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84732128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-102C2H2-like zinc finger protein